Links


Favorite Quotes

“No one should approach the temple of science with the soul of a money changer” -Sir Thomas Browne (1605-1682), English physician and writer

“Turing’s legacy for the cognitive and brain sciences can thus be summarized by observing that, just as nothing in biology makes sense except in the light of evolution . .., nothing about the mind/brain makes sense except in the light of computation.” -Shimon Edelman

“Far better an approximate answer to the right question, which is often vague, than an exact answer to the wrong question, which can always be made precise.” -John Tukey

“There is a theory which states that if ever anyone discovers exactly what the Universe is for and why it is here, it will instantly disappear and be replaced by something even more bizarre and inexplicable. There is another theory which states that this has already happened.” -Douglas Adams, The Hitchhiker’s Guide to the Galaxy

” The brain is a machine assembled not to understand itself, but to survive. Because these two ends are basically different, the mind unaided by factual knowledge from science sees the world only in little pieces. It throws a spotlight on those portions of the world it must know in order to live the next day.” -E.O. Wilson

” Information has its own architecture. Each data source, whether imagery, sound, text, has an inner architecture which we should attempt to discover.” -David Donoho, Plenary Address at ICM 2012

” The P vs. NP problem has been called “one of the most important problems in contemporary mathematics and theoretical computer science” …. That is an understatement. Not only is P vs. NP the defining question of our field; it’s one of the deepest questions ever asked for which we’d know how to recognize an answer…If P=NP, then the world would be a profoundly different place than we usually assume it to be. There would be no special value in “creative leaps,” no fundamental gap between solving a problem and recognizing the solution once it’s found. Everyone who could appreciate a symphony would be Mozart; everyone who could follow a step-by-step argument would be Gauss.” -Scott Aaronson

Bookshelf

Modern Multivariate Statistical Techniques: Regression, Classification, and Manifold Learning
Bayesian Data Analysis, Third Edition
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
Information Theory, Inference and Learning Algorithms
Introductory Functional Analysis with Applications
Fourier Analysis and Its Applications
Statistical Parametric Mapping: The Analysis of Functional Brain Images

Links

Reproducible Research


Open Access Journals


Resources for locating and evaluating NGS tools and services.

Resource Website Notes
Allseq http://allseq.com/ Helps match folks who need NGS with the right service for them
Omicsmaps http://omicsmaps.com Interactive world map of NGS Instruments
Omictools http://omictools.com Web listing of genomics tools for trained bioinformaticists
RNASeqBlog http://www.rna-seqblog.com Website devoted to RNAseq
Repositive https://repositive.io/ collects NGS data from multiple sources.
Seqanswers http://seqanswers.com One of the oldest and most popular NGS forums
SNPedia http://www.snpedia.com SNPedia is a wiki investigating human genetics
Resource Website Notes
DNAnexus http://dnanexus.com Cloud-based DNA data management, analysis, and collaboration platform
Bina Technologies http://www.binatechnologies.com NGS interpretation, comparison
Syapse http://www.syapse.com Making omics data actionable in clinical research and development
Seven Bridges Genomics https://igor.sbgenomics.com NGS variant interpretation open source pipelines
Curoverse http://curoverse.com Based on the Arvados project
BaseSpace http://basespace.illumina.comm Illumina Cloud Service
InsideDNA http://insidedna.me/ Cloud Service

Informatics Software Packages

Resource Website Notes
ABGenomica http://www.abgenomica.com/ Cloud computing platform for genomics
Abiomics http://www.abiomics.eu Bioinformatics
Accelerys http://accelrys.com Bioinformatics
Active Motif http://www.activemotif.com Acquired TimeLogic
AgileBio http://www.agilebio.com Custom bioinformatics
Annai Systems http://www.annaisystems.com Genome data management (Developed UCSC Cancer Genomics Hub)
Appistry http://www.appistry.com Data management, analysis, interpretation & storage (NGS/Other)
Ariadne Genomics http://www.ariadnegenomics.com Expression, pathways, text mining
ArrayGen Technologies www.arraygen.com Bionformatics
aScidea http://www.ascidea.com Bioinformatics solutions including NGS products
Aspera http://www.asperasoft.com Fast efficient method for high-speed data transfer
AssurX http://www.assurx.com Risk and compliance management software for clinical NGS
Atragene http://ri.atragene.com Custom software solutions (NGS interpretation?)
Baseclear http://www.baseclear.com NGS, comprehensive
Biobase http://www.biobase-international.com Identify functionally significant genome variants
Biocomputing Platforms Ltd http://www.bcplatforms.com NGS and variation data analysis and management
BioCOS Life Sciences http://www.biocosls.in NGS and microarray interpretation
Biocrates http://www.biocrates.com/ Metabolomics
BioDiscovery http://www.biodiscovery.com Copy number, expression, NGS
Biogazelle http://www.biogazelle.com/ NGS data analysis and qbase+ software for qPCR data analysis
Bioinformatics Solutions http://www.bioinformaticssolutions.com Mapping
Biomatters http://www.biomatters.com Producers of Geneious
Biomol-Informatics http://www.biomol-ngs.com including NGS analysis
BioNeos http://bioneos.com Custom bioinformatics
Bionivid http://www.bionivid.com Bioinformatics services and development
Bioplanet http://bioplanet.com/gcat Online NGS analysis/tool comparison platform
Biosof http://www.bio-sof.com Sequence Analysis, Structure and Function Prediction
Bioteam http://www.bioteam.net MiniLIMS for NGS platforms
Biotesys http://www.biotesys.de/en/ Clinical/consumer healthcare ‘Omics platform
BMR Genomics http://www.bmr-genomics.com Assembly through interpretation
Cartagenia http://www.cartagenia.com web-based software and database, for diagnostic genome interpretation
cBio http://www.cbiocorp.com bioinformatics solutions (NGS and microbial diagnostics)
ChunLab www.chunlab.com NGS data analysis solutions
Conexio Genomics http://www.conexio-genomics.com Next gen software for HLA and other applications
CSBI Link dead as of June 2013 Software and training in bioinformatics
Cypher Genomics http://cyphergenomics.com Interpretation of NGS data, clinical
Diagnomics http://www.diagnomics.com Software and service for NGS and personalized healthcare
DNA 2.0 https://www.dna20.com Tools for gene design through sequence analysis
DNA Guide http://dnaguide.blogspot.com Bring NGS to clinic
DNAlytics http://www.dnalytics.com Data Mining & IT solutions for personalized medicine
DNASoftware http://www.dnasoftware.com Multiple DNA analysis packages
DNAstar http://www.dnastar.com NGS, assembly, other
Douglas Scientific http://www.douglasscientific.com Microarray, qPCR etc
DREAMgenics www.dreamgenics.com Bioinformatics software and service provider
Eagle Genomics http://www.eaglegenomics.com Pipelines, consulting, scalable genomics analysis
ecSeq Bioinformatics http://www.ecseq.com NGS interpretation, custom pipelines
Enlis Genomics http://www.enlis.com Powerful and simple NGS interpretation software
Era7 Bioinformatics http://www.era7bioinformatics.com Bacterial genomics
Euformatics http://www.euformatics.com Software platforms for NGS (research and clinical)
Existance Genetics Bankrupt. Website offline Tertiary analysis (clinical interpretation) and reporting of NGS data
Fluidigm http://www.fluidigm.com Expression, targeted resequencing, SNP
Gataca http://www.gatacallc.com database construction, genomic analysis, bioinformatics algorithm construction
GE Healthcare http://ge.geglobalresearch.com Bring NGS to clinic
Genalice BV www.genalice.com very accurate and fast (up to 100 x faster than BWA) short read aligner
Genbios http://www.genbios.in/ databases of genes, pathways etc.
GenDx http://www.gendx.com HLA typing
Gene Codes http://www.genecodes.com Bioinformatics software for DNA sequence analysis
Genedata https://www.genedata.com Expressionist, Profiler, other Bioinformatics packages
GeneExplain http://www.genexplain.com Expression, proteomics
GeneGo (Thomson Reuters) http://www.genego.com pathway analysis
Geneious http://www.Geneious.com NGS assembly through annotation
GeneSpring (Now an Agilent product) http://www.genomics.agilent.com/ Gene expression, NGS and proteomics analysis, pathways
GeneStack https://genestack.com/ format-free, cloud-based bioinformatics platform for genomics R&D
Genevia Technologies http://www.genevia.fi systems biological data analysis
Genialis http://www.genialis.com/ Develops interactive visual analytics web applications and analyses NGS data
GenoLogics http://genologics.com LIMS systems for -omics labs
Genomatix http://www.genomatix.de NGS analysis software
Genome Compiler www.genomecompiler.com Free and paid genome analysis packages
Genome Enterprise Limited http://www.genome-enterprise.com NGS analysis associated with TGAC
GenomeQuest http://www.genomequest.com NGS: research and clinical applications
Genomic Expression http://www.genomicexpression.com Proprietary cost-effective genomics diagnostics
Genominon https://www.genomenon.com/ Both curated variant databases and interpretation packages
GenomOncology http://www.genomoncology.com Tools for molecular pathology and medical genetics
Genoptix Medical Laboratory http://www.genoptix.com Personalized diagnostics some seq analysis
GenoSpace http://www.genospace.com Cloud based ‘omics secure data sharing targeting clinical applications
Genostar http://www.genostar.com Solutions for microbial genome, proteome and metabolome comparison
Geospiza http://www.geospiza.com NGS/Microarray analysis and LIMS software
GNS healthcare http://www.gnshealthcare.com Big Data management devoted to healthcare solutions
Golden Helix http://www.goldenhelix.com Multiple genomics packages
Gsolutions Biosciences LLC http://gsolutionsbiosciences.com Customized data analysis (they can build an NGS platform for you)
Heracle BioSoft S.R.L. http://www.dnabaser.com Heracle makes DNABaser Assembly software
iBinom https://www.ibinom.com/ Intuitive, cloud-based interpenetration pipeline for geneticists and clinicians
Igenbio.Inc www.igenbio.com Advanced bioinformatics services
Innventis http://www.innventis-pharma.com/ Clinical and personal medicine informatics platform
InSilicoDB https://insilicodb.com Genomics databases and in-silico genomics tools
Integra Gen http://www.integragen-genomics.com Software NGS interpretation/comparison, bioinformatics
Integromics http://www.integromics.com Data handling and analysis for NGS, microarray, qPCR
Interactive Biosoftware http://www.interactive-biosoftware.com Visualization, interpretation and annotation of NGS data
Intrepid Bioinformatics http://www.intrepidbio.com NGS, SNP, Database
IntuitiveGenomics http://www.intuitivegenomics.com NGS assemply, annotation, interpretation
Invitae http://www.invitae.com Working with Genomic Health and Locus Dev. (variant database)
JMP Genetics http://www.jmp.com Solutions for research, clinical, and agricultural genomics
JSI Medical Systems http://www.jsi-medisys.com NGS analysis software
Knome http://knome.com NGS interpretation, clinical (bought by Tute Genomics 11/15)
Korilog http://www.korilog.com Products based on Klast high perfomance Seq. Comparison tool
Kovid Bioanalytics www.kovidbioanalytics.com Statisitical Analysis, Genomics Data Mining, Clinical Informatics
Lab 7 systems www.lab7.io Integrates multiple NGS software packages coherently
LabCorp https://www.labcorp.com Including clinical genomics
Leucine Rich Bio http://www.leucinerichbio.com/ Heuristic and statistical analysis of omics data and basic bioinformatics
Locus Development http://locusdevelopmentinc.com Bring NGS to clinic
Lummei Analytics https://lummei.net NGS interptetaion software packages
Maverix Biomics www.maverixbio.com Cloud-based NGS data management, interpretation, and visualization
MedGenome http://www.medgenome.com Sanger Sequencing and NGS-based clinical genomics
Microsoft http://www.microsoft.com Genomics
MolecularHealth http://MolecularHealth.com Molecular safety, molecular oncology
MultiD Analyses www.multid.se qPCR analysis software
NextBio (Illumina) http://www.nextbio.com Genomics, expression, literature, clinical
NuMedii http://numedii.com Genome-wide molecular profiles
Ocimum Biosolutions http://www3.ocimumbio.com Research Accelerator (for ‘Omics comparison), extensive databases
Omicia http://www.omicia.com Automated clinical variant interpretation/reporting for genomic testing with NGS
Omixon http://www.omixon.com Targeted sequencing, HLA, variant analysis
OncoDNA http://www.oncodna.com Software packages for deep sequencing and cancer biomarker monitoring
Omicsoft http://www.omicsoft.com Bioinformatics, Cancer Genomics (TCGA), and OMIC data storage solution
Paradigm4 www.paradigm4.com Scalable bioinformatics data management with tertiary analytics
Partek http://www.partek.com Software - NGS, expression etc.
Personalis http://www.personalis.com Interpretation of NGS data, clinical
Phenosystems http://www.phenosystems.com Software for the molecular genetics community since 2002
Premier Biosoft http://www.premierbiosoft.com Bioinformatics
QIAGEN (CLC Bio) http://www.clcbio.com Comprehensive, Including NGS
QIAGEN (Ingenuity Systems) http://www.ingenuity.com Genome, pathway analysis
Qlucore http://www.qlucore.com A D.I.Y bioinformatics software for exploration and visualization of big data
Real Time Genomics http://www.realtimegenomics.com Sequence alignment through variant database comparison
Rimarcable http://www.rimarcable.nl Custom Software solutions (including healthcare applications)
Salsa Computing http://www.salsacomputing.com Big data, including bioinformatics
Samsunggenome http://www.samsunggenome.com NGS sequencing through interpretation
Sapio Sciences http://www.sapiosciences.com LIMS systems for genomics labs
Scale Genomics http://www.scalegenomics.com Cloud storage and analysis of NGS data (Domain seems to be parked)
ScaleMP http://www.scalemp.com Big data company, assembly through interpretation
SGI Http://www.sgi.com Big data company, assembly through interpretation
Silicon Valley Biosystems http://www.svbio.com NGS interpretation software
Simulconsult http://www.simulconsult.com Sofware packages to help clinicians interpret genetic variant tables
Soft Genetics Inc http://www.softgenetics.com NGS interpretation software packages
SolveBio http://www.solvebio.com Genome analysis
Sophia Genetics http://www.sophiagenetics.com Clinical NGS service with stand-alone software
Spiral Genetics http://www.spiralgenetics.com Annotation
StationX http://www.stationxinc.com Genome interpretation
Strand Life Sciences http://www.strandls.com Genespring, Avadis-NGS
TechTrendsIT http://www.techtrendsit.com Software builders. Can assist with cloud computing and big data etc.
Translational Software http://www.translationalsoftware.com Bring NGS to clinic
Unipro http://ugene.unipro.ru/ Free open source bioinformatics platform
Woodward Informatics Ltd http://www.strychnine.co.uk Custom bio- and chemo-informatics
World Fusion www.w-fusion.com Informatics for drug discovery, metagenomics, transcriptomics etc.
xGen Cybernetics www.xgencloud.com Bioinformatics, clinical genetics and predictive medicine
Zymo Research www.zymoresearch.com/services Bioinformatics for all NGS applications/epigenetic analysis

Genomics Service Providers (Consumer and Clinical Genomics)

Resource Website Notes
23 and Me http://www.23andme.com Consumer genomics
Acobiom http://www.acobiom.com Biomarker discovery/personalized medicine, diagnostics
Allere Laboratory http://www.allerelabs.com/about.php NGS - Based health and wellness
Alpha Genomix http://www.alphagenomix.com/ Clinical NGS/molecular diagnostics center
Ancestry.com http://www.ancestry.com Integrating geneologies with DNA analysis
Ariana Pharma http://www.arianapharma.com Multiple research/clinical genomics applications
Asuragen http://www.asuragen.com Clinical NGS, ion torrent, FFPE capabilities
Biocrates http://www.biocrates.com/ Metabolomics
Biodiscovery http://www.biodiscovery.com Genomics analysis consulting
Caris Life Sciences http://www.carislifesciences.com/platforms/ Multi-platform tumor profiling for precision cancer therapy
Castle Medical http://www.castlemedical.com Clinical tests include NGS CD Genomics
Claritas Genomics http://claritasgenomics.com/ Exome sequence interpretation for rare disease diagnosis
CompanionDx http://www.companiondxlab.com/ Clinical NGS
Counsyl http://www.counsyl.com Carrier Screening via NGS or Targeted Genotyping
Cypher Genomics http://cyphergenomics.com Interpretation of NGS data, clinical
deCode Genetics http://www.decode.com Clinical genomics
Diploid http://www.diploid.com Rare disease diagnostics/genome interpretation specialists
DNA Link http://www.dnalink.com NGS, microarray, personal genomics, forensics etc.
Edge Bio http://www.edgebio.com CLIA exome sequencing
Foundation Medicine http://www.foundationmedicine.com Cancer diagnostics (including NGS)
Fulgent Diagnostics http://fulgentdiagnostics.com/ Clinical NGS
Gene TLC http://www.genetlc.com Personalized genomics
GenebyGene http://www.genebygene.com Services include Ancestry, Health, Research, and Paternity
GeneDx http://www.genedx.com Clinical - including whole exome
Geneyouin http://www.geneyouin.ca Direct to consumer NGS and sequence analysis
Genomic Engenharia Molecular http://www.genomic.com.br Paternity testing/consumer/clinical genomics
Genomics plc http://www.genomicsplc.com/ Clin. Genomics. Variant Calling. Interpretation Engine. Pharmaceutical Services
Good Start Genetics http://www.goodstartgenetics.com Carrier screening
Health In Code http://www.healthincode.com Genetic diagnosis of inherited cardiovascular diseases: NGS/Sanger
Lab solutions (.net) http://www.labsolutions.net/ Drug screening and confirmatory testing
M2Gen http://www.m2gen.com/ Medical Informatics (including cancer pharmacogenomics)
MapMyGenome http://mapmygenome.in/ Consumer genomics
Millennium Health Labs http://www.millenniumhealth.com/ Personalized Medicine
MolecularMD http://www.molecularmd.com Comprensive CRO with significant NGS and bioinformatics capabilities
Multiplicom http://www.multiplicom.com Dx kits for targeted resequencing.
Mycroarray http://mycroarray.com Custom microarrays and capture bait libraries
Myriad Genetics https://www.myriad.com Clinical Genetics and Genomics Services
Natera http://www.natera.com Clinical prenatal genetic testing
Navigenics http://www.navigenics.com Consumer genomics (Assimilated by the Thermo Collective)
Nextcode https://www.nextcode.com/ Delivering the resources developed at deCODE Genetics to the clinical domain.
NextGen Diagnostics http://nextgendx.biz/ Clinical and Reseaerch Genomics
Origen Laboratories http://theorigen.com/ Clinical lab with expertise in pharmacogenomics and hereditary cancer.
Oxford Gene Technology http://www.ogt.co.uk RNASeq, Targeted sequencing, Familial/Trio Analysis and Advanced Analysis
Paradigm Diagnostics http://www.paradigmdx.org Clinical interpretation of NGS data
Parexel https://www.parexel.com/ Clinical esearch service with new genomics division
Pathgroup http://www.pathgroup.com Pathology services including clinical NGS
Pathogenica http://www.pathogenica.com Clinical Sequencing/NGS
Pathway Genomics http://www.pathway.com Personal genomics/nutrition
Personal Genome Diagnostics http://www.personalgenome.com Clinical cancer exome sequencing through interpretation
Personalis http://www.personalis.com Interpretation of NGS data, clinical
Prevention Genomics http://www.preventiongenetics.com Clinical Genetic Screening
Prognosys http://www.prognosysbio.com/sequensys NGS Sequencing and analysis services
qGenomics http://www.qgenomics.com Genomics for human health
QUEST Diagnostics http://www.QuestDiagnostics.com Clinical Diagnostics including clinical genomics (see Genomic Vision)
Response Genetics http://www.responsegenetics.com Genetic and genomic approaches to cancer diagnostics
Rheumakit http://www.rheumakit.com NGS-based Rheumatology diagnostics
Saphetor http://saphetor.com/ Provides NGS analysis and interpretation over a secured web portal
Sequenta http://sequentainc.com Clinical NGS and immunology
Smith Family Clinic http://smithfamilyclinic.org/ Using genomics data to uncover undiagnosed disease.
Sophia Genetics http://www.sophiagenetics.com Integrated Clinical NGS Dry Lab Service
Sorensen Genomics http://www.sorensongenomics.com Clinical and forensic genomics
Synexa Life Sciences http://www.synexagroup.com Clinical human genomics
Theragen Etex http://www.theragenetex.com NGS, Cancer Panels, Bioinformatics, Prognostic service, NIPT
UD-GenoMed http://www.ud-genomed.hu Full service clinical genomics lab
XDx http://www.xdx.com Clinical, expression-based transplant monitoring Forenisic DNA databasing etc

Forensic Genomics

Company Website Notes
Data Unlimited International, Inc http://www.duii.com/ LIMS systems developed for Froensic systems including genetic data
DNA Solutions https://www.dnasolutionsusa.com Evidence evaluation, testing, case reviews and court room testimony
Independent Forensics http://www.ifi-test.com/ Forensic DNA testing services, including training and expert witnesses
JusticeTrax http://www.justicetrax.com LIMS for For forensic DNA sample tracking
NicheVision Forenics http://nichevision.com/ Software solutions for DNA analysis and sample tracking
Nippon Control System Corporation http://www.nippon-control-system.co.jp/en/ SimpDoc (LIMS) developed for the Japanese forenics community.
NMS Labs http://www.nmslabs.com laboratory services
Parabon Snapshot DNA Phenotyping https://snapshot.parabon-nanolabs.com/ Software to predict appearance from genomic data
Porter Lee Corporation http://porterlee.com Forenics LIMS systems
Promega http://www.promega.com Forenisic DNA databasiong etc
RTI International http://www.forensicCOE.org Technology assistance to the forensic science community
Small Pond LLC http://www.smallpondllc.com DNA profile databasing services
Softgenetics http://www.softgenetics.com DNA analysis software
Sorensen Genomics http://www.sorensongenomics.com Clinical and forensic genomics
StacsDNA http://www.stacsdna.com Sample tracking and control software designed for forensic DNA casework

Genomics Service Providers

Company Website Notes
23 and me http://www.23andme.com Consumer genomics
5am Solutions http://www.5amsolutions.com Custom bioinformatics
ACGT Inc. www.acgtinc.com Sanger sequencing through NGS and analysis
Active Motif http://www.activemotif.com ChIP-Seq, (h)MeDIP-Seq and Bisulfite Sequencing among others
Adaptive Biotechnologies http://www.adaptivebiotech.com NGS on immune cells, moving to clinical
Advanced Biological Laboratories https://www.therapyedge.com IT support and decision support software for healthcare professionals
Affymetrix (Eureka Genomics) http://www.eurekagenomics.com NGS through assembly, other
Allere Laboratory http://www.AllereLabs.com NGS - Based health and wellness
AllGenetics http://www.allgenetics.eu Molecular genetics support for academic and corporate labs
Almac group http://www.almacgroup.com CLIA lab, microarray including CNV and SNP
Ambry Genetics http://www.ambrygen.com Clinical Genetics and Genomics Services
Ancestry.com http://www.ancestry.com Integrating geneologies with DNA analysis
Applied Biological Materials, Inc. http://www.abmgood.com NGS, Bioinformatics services
Applied Genomics Institute http://www.appliedgenomics.org NGS and related BioInformatics
Applied Microarrays http://www.appliedmicroarrays.com Custom microarray
Ariana Pharma http://www.arianapharma.com Multiple research/clinical genomics applications
AROS Applied Biotechnology http://www.arosab.com Extraction, PCR, microarray, and NGS services.
ArrayGen Technologies www.arraygen.com Custom chip design,Microarray,NGS,Bioinformatics development
Ashion Analytics http://ashionanalytics.com/ NGS services associated with TGEN
Asuragen http://www.asuragen.com Clinical NGS, ion torrent, FFPE capabilities
Atlas BioLabs http://www.atlas-biolabs.de NGS, Arrays, CGH, Bioinformatics
BairesDev http://www.bairesdev.com/ BairesDev can develop software and web-apps for your algorithm
Baseclear http://www.baseclear.com NGS, comprehensive
Basepair http://www.basepair.io/ Data management, analysis, interpretation
Beckman Coulter Genomics http://www.beckmangenomics.com NGS, Sanger sequencing, data analysis, other
Beijing Genomics (BGI) http://www.genomics.cn NGS through assembly, interpretation
Bina Technologies http://www.binatechnologies.com NGS interpretation, comparison
Bio S & T http://www.biost.com Sanger sequencing and expression, WGS?
BioChain http://www.biochain.com NGS through genome interpretation
BioCOS Life Sciences http://www.biocosls.in NGS and microarray interpretation
BioDigital valley http://www.biodigitalvalley.com Proteomics, Genomics, Bioinformatics
Biodiscovery http://www.biodiscovery.com Genomics analysis consulting
Biogazelle http://www.biogazelle.com/ Transcriptome analysis and data mining services
Bionivid www.bionivid.com Bioinformatics services
Bioo http://www.biooscientific.com Comprehensive including NGS
Bioserve http://www.bioserve.com human DNA, microarray
BMR Genomics http://www.bmr-genomics.com NGS through interpretation
Caliper (PE) http://www.caliperls.com Lab auto and NGS services
Cartagenia http://www.cartagenia.com Enterprise integration of clinical NGS
CCCB - Harvard http://cccb.dfci.harvard.edu/cccb/ Analytical Computational biology services for industry and academe @ Harvard
CD Genomics http://www.cd-genomics.com/ Full service genomics provider
Centrillion Biosciences https://www.centrillionbio.com Experimental design, data production and bioinformatic services
ChunLab www.chunlab.com Next gen sequencing and analysis services
Claritas Genomics http://claritasgenomics.com/ Exome sequence interptretation for rare diseases
Clevergene www.clevergene.in Genome Analytics Services to global clientele
Cofactor Genomics http://www.cofactorgenomics.com NGS, bioinformatics
Complete Genomics http://www.completegenomics.com NGS through assembly (Subsidiary of BGI) Computomics
Computomics http://www.computomics.com NGS interpretation for agricultural biotech
Contig Express http://www.contigexpress.com Integrated genomics data service provider
Core Informatics www.coreinformatics.com Comprehensive bioinformatics on the cloud
CorrZ http://www.corrz.com Biostatistics, analysis for NGS and microarray
Counsyl www.counsyl.com Carrier Screening via NGS or Targeted Genotyping
Courtagen http://www.courtagen.com NGS through interpretation, proteomics
Covance Genomics http://www.covance.com Full gervice genomics partner
CPGR http://www.cpgr.org.za Non profit genomics/bioinformatics center
Creative Bioinformatics http://www.creativebioinformatics.com/ Consultancy that will tailor a bioinformatics team to your project.
CromDx www.cromdx.com High throughput sequencing/ research and clinical analytical services
Cypher Genomics http://cyphergenomics.com Interpretation of NGS data, clinical
Cytogenomics http://www.cytognomix.com High throughput interpretation of genomic variation
Data2Bio http://www.data2bio.com Design, Execute, analyse NGS projects
deCode Genetics http://www.decode.com Clinical genomics
Diploid http://www.diploid.com Rare disease diagnostics/genome interpretation specialists
DNA Link www.dnalink.com NGS, microarray, personal genomics, forensics etc.
DNA SEQ Alliance www.dna-seqalliance.com Interpretation of NGS using crystallography in the clinical environment.
DNAlytics http://www.dnalytics.com Data Mining & IT solutions for personalized medicine
DNASTAR http://www.dnastar.com Genome Assembly Services (and sequencing, downstream analysis etc.)
DREAMgenics www.dreamgenics.com Bioinformatics software and service provider
ecSeq Bioinformatics http://www.ecseq.com Sequencing- assembly and analysis
Edge Bio http://www.edgebio.com CLIA exome sequencing
Era7 Bioinformatics http://www.era7bioinformatics.com Bacterial genomics
Euformatics http://www.euformatics.com Consultation on NGS projects
Eurofins MWG http://www.eurofins.com/en.aspx Extensive services including genomics services
Evogene http://www.evogene.com Identify agrinomically imortant plant genes
Expression Analysis http://www.expressionanalysis.com WGS, RNAseq, microarray
Eye.Q.Consulting, Corp www.eyeqconsulting.net Irvine, CA based genomics analysis/interpretation service
F’ Analytics http://fprimeanalytics.com/ Big Data services including NGS Pipeline design
FamilytreeDNA www.familytreedna.com Ancestry/geneology service
Fasteris http://www.fasteris.com Including Illumina NGS
Fios Genomics http://www.fiosgenomics.com Exome, methylation for epigenetics, other
FitGenes http://www.fitgenes.com DNAprofiling, Nutrigenomics
Floragenex http://www.floragenex.com Plant and animal NGS
Foundation Medicine http://www.foundationmedicine.com Cancer diagnostics (including NGS)
Ganit labs http://www.ganitlabs.in Expression, NGS, genotyping
GATC-Biotech http://www.gatc-biotech.com NGS
GenAlysis http://www.genalysislaboratory.com/ Veterinary genetic testing
Gene TLC http://www.genetlc.com Personalized genomics
GenebyGene http://www.genebygene.com Services include Ancestry, Health, Research, and Paternity
Genedata https://www.genedata.com/ Biologicial data analysis, IT and bioinformatics consulting services
GeneDx http://www.genedx.com Clinical - including whole exome
Genergy Bio-tec http://www.genenergy.cn We provide GWAS, NGS service
GeneWiz http://www.genewiz.com DNA services including NGS
Geneyouin www.geneyouin.ca Direct to consumer NGS and sequence analysis
Genialis http://www.genialis.com Bioinformatics services as well as standalone analysis products
Genohub https://genohub.com Helps researchers identify the best services for their NGS project.
Genomatix www.genomatix.de NGS analysis services
Genome British Columbia http://www.genomebc.ca Investment and management of genomics projects
Genome Compiler www.genomecompiler.com Genome analysis and synthetic DNA design (linked synthetic DNA services)
Genome Enterprise Limited http://www.tgac.ac.uk/ Next Gen Sequencing associated with TGAC
Genome International Corporation http://www.genome.com Bioinformatics support for the life sciences
Genome Life Sciences http://www.genomels.com Bioinformatics support for the life sciences
Genome Project Solutions http://genomeprojectsolutions.com NGS sequencing though interpretation
GenomeDX http://www.genomedx.com Clinical cancer genomics
Genomic Engenharia Molecular www.genomic.com.br Paternity testing/consumer/clinical genomics
Genomic Express http://www.GenomicExpress.com CLIA laboratory, consumer genomics, medical genetics
Genomic Expression http://www.genomicexpression.com NGS libraries
Genomic Health http://www.genomichealth.com Clinical genomics
Genomic Vision http://www.genomicvision.com/ Research and clinical genomics services (epigenetics)
Genomics plc http://www.genomicsplc.com/ Clin. Genomics. Variant Calling. Interpretation Engine. Pharmaceutical Services
Genomnia http://www.genomnia.it NGS sequencing through interpretation
Genomnia srl www.genomnia.com NGS and Bioinformatic analysis service provider
Genoptix Medical Laboratory http://www.genoptix.com personalized diagnostics some seq analysis
Genoscreen http://http://www.genoscreen.com NGS, interpretation, consultation
GenoSplice technology http://www.genosplice.com “Wet” lab and Bioinformatics services
Genostar http://www.genostar.com Solutions for microbial genome, proteome and metabolome analyses
Genotypic http://www.nextgenseq.com NGS, Microarrays, custom microarrays, Bioinformatics, PCR, and more
GenXPro www.genxpro.de Transcriptomics, Genomics, Epigenomics, Bioinformatics
Golden Helix http://www.goldenhelix.com Genomic analysis/genomics project consultation
Good Start Genetics http://www.goodstartgenetics.com Carrier screening
Gsolutions Biosciences LLC http://gsolutionsbiosciences.com Gsolutions will assemble a team to build a custom bioinformatics pipeline
Health In Code http://www.healthincode.com Genetic diagnosis of inherited cardiovascular diseases: NGS/Sanger
High Throughput Sequencing http://www.htseq.org Service associated with UW
Holgentech http://www.holgentech.com Fractal defect mining, Fractal analytics (cancer)
Hybridstat www.hybridstat.gr Software design/bioinformatics consulting
Ibioa http://www.ibioa.com/ CRO, with NGS analysis as one of many services
IDT http://www.idtdna.com In addition to Oligos, they do 454 sequencing as well
Igenbio.Inc www.igenbio.com Advanced bioinformatics services
Illumina http://www.illumina.com NGS
IMBcom http://www.imbcom.com.au Commercialization of academic genomics services
IMGM Laboratories www.imgm.com Comprehensive NGS/Bioinformatics provider
Inqaba Biotechnical Industries www.inqababiotec.co.za African NGS and Bioinformatics services
IntegraGen www.integragen-genomics.com Exome sequencing, Transcriptomics, Epigenomics, Genotyping, Bioinformatics
Interleukin Genetics http://www.ilgenetics.com Consumer genetic tests
InterpretOmics www.interpretomics.co Big Data and Genome Interpretation Company
Intomics http://www.intomics.com/ CRO specializing in High Throughput data
iRepertoire http://irepertoire.com NGS on immune cells
IZSTO http://www.izsto.it/ NGS services (specialize in food safety)
Keygene http://www.keygene.com Including whole genome sequencing of plants
Knome http://knome.com NGS interpretation, clinical
LabCorp https://www.labcorp.com Including clinical genomics
LC Sciences http://www.lcsciences.com Services include targeted sequencing and custom microarrays
Lexogen http://www.lexogen.com RNA-Seq R&D
LGC Genomics http://www.lgc.co.uk Nucleic acid extraction through NGS analysis
Lucigen http://www.lucigen.com Library prep through NGS analysis
Lummei Analytics https://lummei.net Data storage through data interpretation service
M2Gen http://www.m2gen.com/ Medical Informatics (including cancer pharmacogenomics)
Macrogen http://macrogen.com NGS, Sanger sequencing, microarray
Malaysian Genomics Resource Ctr http://www.mgrc.com.my Sequencing through analysis
Malaysian Genomics… (MGRC) http://www.mgrc.com.my NGS through Interpretation
MapMyGenome http://mapmygenome.in/ Consumer genomics
MedGenome http://www.medgenome.com Sanger Sequencing and NGS-based clinical genomics
Medomics http://www.medomics.com Clinical mitochondrial genomics
Metamark Genetics http://www.metamarkgenetics.com Clinical genomics, cancer focus
MOgene http://mogene.com NGS, microarray
MolecularMD http://www.molecularmd.com Comprensive CRO with significant NGS and bioinformatics capabilities
Moleculo http://www.moleculo.com DNA sequencing method: very long and accurate reads
Multiplicom http://www.multiplicom.com Dx kits for targeted resequencing.
Mycroarray http://mycroarray.com Custom microarrays and capture bait libraries
MyGenomics www.mygenomics.com Full NGS service (RNAseq a specialty)
Myriad Genetics https://www.myriad.com Clinical Genetics and Genomics Services
Natera http://www.natera.com Clinical prenatal genetic testing
Navigenics http://www.navigenics.com Consumer genomics (assimilatred by the Thermo Collective)
New Zealand Genomics Limited http://www.nzgenomics.co.nz/ Provides genomics technology and bioinformatics services
Newtopia www.newtopia.com Personalized medicine consultants
Nextcode https://www.nextcode.com/ Delivering the resources developed at deCODE Genetics to the clinical domain.
NextGen Diagnostics http://nextgendx.biz/ Clinical and Reseaerch Genomics
NorthShore Bio www.northshorebio.com “Tunable” nanopores in silicon with label-free, direct-to-digital detection.
Novocraft http://www.novocraft.com NGS Sequence Analysis and Custom pipelines
NRGene http://nrgene.com/ Assemble NGS data for newly studies species
Nucleome Informatics www.nucleomeinfo.com Next gen sequencing and data analysis
Ocimum Biosolutions http://www3.ocimumbio.com Expression, LIMS, other
Oftalmic http://www.oftalmic.com Sequencing and analysis services (inherited eye diseases)
Omega Bioservices http://www.omegabioservices.com Exome sequencing, interpretation
Omics Maps http://omicsmaps.com Crowd Sourced list of sequencing centers
Omics Systems http://www.omicssystems.com Comprehensive list of genomics services
OmicsX http://www.omicsx.com/ Data mining and analysis services
OncoDNA www.oncodna.com Targeted sequencing to exome with oncologic theranostic interpretation
Operon http://www.operon.com Oligos through NGS analysis
Opgen http://www.opgen.com Genome mapping, assembly
Origen Labs http://theorigen.com/ Clinical lab with expertise in pharmacogenomics and hereditary cancer.
Otogenetics http://www.otogenetics.com Whole exome NGS, RNAseq
Oxford Gene Technology http://www.ogt.co.uk RNASeq, Targeted sequencing, Familial/Trio Analysis and Advanced Analysis
Paradigm Diagnostics http://www.paradigmdx.org Clinical interpretation of NGS data
Parexel https://www.parexel.com/ Clinical esearch service with new genomics division
Pathgroup http://www.pathgroup.com Pathology services including clinical NGS
Pathogenica http://www.pathogenica.com Clinical Sequencing/NGS
Pathtwork Genomics http://www.pathworkdx.com CLIA microarray (RNAseq?)
Pathway Genomics http://www.pathway.com Personal genomics/nutrition
Perkin Elmer http://www.perkinelmer.com NGS sequencing, exome
Personal Genome Diagnostics http://www.personalgenome.com Clinical cancer exome sequencing through interpretation
Personalis http://www.personalis.com Interpretation of NGS data, clinical
Population Genetics http://www.populationgenetics.com Targeted resequencing of large populations
Prevention Genomics http://www.preventiongenetics.com Clinical Genetic Screening
Progenus http://www.progenus.be Sequencing and analysis (Sanger through NGS)
Prognosys http://www.prognosysbio.com/sequensys NGS Sequencing and analysis services
QFAB http://www.qfab.org Bioinformatics service specialists
qGenomics www.qgenomics.com Genomics for human health
Qtlomics Technology http://www.qtlomics.com/ Merging NGS/Bioinformatics with traditional plant breeding
Quality Partner http://www.quality-partner.be 16S metagenomic analysis applied to food microbiology
Quartz Bio http://www.quartz.bio/ We are a clinical bioinformatics research services
QUEST Diagnostics http://www.QuestDiagnostics.com Clinical Diagnostics including clinical genomics (see Genomic Vision)
Raindance http://www.raindancetech.com Raindance offers design services in addition to instrumentation
Response Genetics http://www.responsegenetics.com Genetic and genomic approaches to cancer diagnostics
Rheumakit http://www.rheumakit.com NGS-based Rheumatology diagnostics
Samsunggenome http://www.samsunggenome.com NGS sequencing through interpretation
SciGenom http://www.scigenom.com Full service NGS provider
SCR Consulting www.scr-consulting.co.uk Biotech IT service - Builds custom informatics for life scientists
Second Genome http://www.secondgenome.com NGS with microbiome focus
SEQLAB http://www.seqlab.de Including NGS
Seqmatic www.seqmatic.com/ MiSeq and now HiSeq sequencing, analysis, metagenomics
Sequenom http://www.sequenom.com Microarray structural/functional genomics
Sequenta http://sequentainc.com Clinical NGS and immunology
Seqwright http://www.seqwright.com NGS through assembly
ServiceXS http://www.servicexs.com NGS, genotyping, methylation and expression analysis services
SGI (Synthetic Genomics) https://sgidna.com/ NGS, synthetic genes
Shanghai Biotech http://www.shbiotech.org NGS panels and Bioinformatics services
Skuldtech www.skuldtech.com Biomarker Discovery, Diagnostic NGS - very well established
SmartGene http://www.smartgene.com application-specific solutions for clinical sequencing
Sophia Genetics http://www.sophiagenetics.com Integrated Clinical NGS Dry Lab Service
Sorensen Genomics http://www.sorensongenomics.com Clinical and forensic genomics
Spiral Genetics http://www.spiralgenetics.com Annotation
STATSARRAY http://statsarray.com NGS data analysis services (also maintain omictools database)
Sulzberger Columbia Genome Center www.genome.columbia.edu Full service NGS provider
Synexa Life Sciences http://www.synexagroup.com Clinical human genomics
Tahoe Informatics http://www.tahoeinformatics.com Bioinformatics (NGS, Time Logic Accelerated BLAST etc)
TATAA Biocenter www.tataa.com gene expression profiling services
Taueret Laboratories http://www.taueret.com Genetic laboratory services to researchers of medical genetics
UD-GenoMed http://www.ud-genomed.hu Full service clinical genomics lab
Univ British Columbia Genome Svcs www.ngs.med.ubc.ca Ion Torrent Sequencing + analysis services
Wuxi Apptec http://www.wuxiapptec.com Comprehensive, including NGS and expression analysis
xcelris labs http://www.xcelrislabs.com Sequencing and analysis (Sanger through NGS)
XDx http://www.xdx.com Clinical, expression-based transplant monitoring
Zymo Research www.zymoresearch.com/services Comprehensive NGS services for epigenetic analysis

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